These savory Cheese Muffins are a perfect side dish or snack to share with the kids. They’re easy to make, yummy to eat, and have a cheesy deliciousness everyone will love!

Cheese muffins on cooling rack with one muffin cut in half.

I love savory muffins like my Pizza Muffins, Vegetable Muffins, and Broccoli Muffins, and wanted to add a classic Cheese Muffin to the mix. This recipe is a perfect side dish for a range of soups, salads, and chili recipes, it has pure cheese flavor, and is so easy to make.

The texture is a soft, cheesy muffin that is super tender. They are incredibly moist, contain ample protein and calcium, and even freeze well.

You can even serve them for an easy toddler snack! Read on for the full recipe.

(You may also like my 10 best Mini Muffin Recipes, How to Freeze Muffins and Pizza Muffins.)

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Ingredients You Need

Here’s a look at the ingredients you need to have on hand to make Cheese Muffins so you know what to pick up from the store or have ready.

Ingredients for cheese muffins on countertop.
  •  All-purpose flour: I like to use all-purpose flour in this toddler muffin recipe so the end result is light and fluffy. You can use whole wheat pastry flour if desired.
  • Baking powder and baking soda: A combination of these ingredients helps to ensure the muffins rise and bake through as expected. Be sure they are evenly incorporated into the batter.
  • Salt: This recipe needs a little salt to bring out the flavors. I use fine sea salt in my baking.
  • Greek yogurt: Plain Greek yogurt adds tenderness and nutrition to this recipe. Plan to use Greek-style yogurt to ensure the ratio of wet to dry ingredients is correct.
  • Milk: I like to use whole milk in my recipes, so that’s what I use here, but another type will work similarly.
  • Butter: I use unsalted butter in my cooking and baking so I can control the added salt. It adds richness and flavor to the Cheese Muffins.
  • Eggs: Large eggs help ensure the muffins bake through properly, rise as expected, and have a tender crumb once baked.
  • Cheddar cheese: I prefer to use sharp cheddar cheese in this recipe so the muffins have plenty of flavor. You can buy it pre-shredded or shred a block of cheese with a handheld cheese grater or box grater.
  • Garlic powder and parsley: Feel free to add either of these, if desired, for more flavor.

Step-by-Step Instructions

Here’s a preview of how to make these Cheese Muffins so you know what to expect from the process. Scroll down to the end of this post for the full information, including the amounts and the timing.

Dry ingredients for cheese muffins in glass bowl with whisk.

Step 1. In a medium bowl, stir together the dry ingredients.

Batter for cheese muffins in glass bowl.

Step 2. In another bowl, stir together the wet ingredients. Gently stir the wet ingredients into the dry ingredients.

Cheese muffins in muffin pan before baking.

Step 3. Divide batter among the prepared muffin tin.

Cheese muffins in muffin pan after baking.

Step 4. Bake until the edges are lightly golden brown and a cake tester inserted into the center comes out clean.

TIP: These muffins are best served warm, but they also work at room temperature.

Frequently Asked Questions

Can I add a vegetable to these Cheese Muffins?

Feel free to add ½ cup minced broccoli, ½ cup shredded carrot, or ½ cup shredded zucchini squeezed very dry.

What goes well with Cheese Muffins?

You can serve these alongside fruit or sliced raw veggies as a simple snack or meal, or serve as a side dish with Vegan Tomato Soup, Vegetarian Bean Chili, White Turkey Chili, or another soup or salad.

What kind of cheese works best in Cheese Muffins?

Shredded cheddar cheese, Monterey Jack, Fontina, mozzarella, Gruyere, or really, any other cheese your family enjoys.

Cheese muffins on cooling rack.

How to Store

Once cooled, store Cheese Muffins in an airtight container for up to 3 days at room temperature. Store in the fridge in an airtight container for up to 5 days.

Warm slightly to serve from the fridge (they firm up a bit when they’re cold so warming slightly returns them to their softer texture).

You can also freeze the muffins in a freezer bag with as much air removed as possible for up to 3 months. Thaw at room temperature or in 15-second increments in the microwave.

Best Tips for Success

  • I like using whole-milk Greek yogurt in this recipe.
  • Substitute cup-for-cup gluten-free flour in place of the wheat flour as needed.
  • Dip into warmed pizza sauce or serve alongside soup, salad, or another main dish.

I’d love to hear your feedback on this post, so please rate and comment below!

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Cheese muffins on cooling rack with one muffin cut in half.

Favorite Cheese Muffins

These savory Cheese Muffins are a perfect side dish or snack to share with the kids. They're easy to make, yummy to eat, and have a cheesy deliciousness everyone will love!
5 from 5 votes
Prep Time 10 minutes
Cook Time 16 minutes
Total Time 26 minutes
Cuisine American
Course Breakfast
Calories 154kcal
Servings 12
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Ingredients

  • cups all-purpose flour
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon salt
  • 1 cup whole-milk plain Greek yogurt
  • cup milk
  • ¼ cup unsalted butter (melted and slightly cooled)
  • 2 eggs (lightly beaten)
  • 1 cup shredded cheddar cheese
  • ½ teaspoon garlic powder (optional for more flavor)
  • ¼ cup minced fresh parsley (optional for more flavor)

Instructions

  • Preheat the oven to 375 degrees F. Grease a 12-cup standard muffin pan with nonstick spray.
  • In a medium bowl, stir together the flours, baking powder, baking soda, and salt.
  • In another bowl, stir together the yogurt, milk, butter, eggs, and cheese.
  • Gently stir the yogurt mixture into the flour mixture. (Expect the batter to be thick.)
  • Add the garlic powder and parsley, if using.
  • Divide batter among the prepared muffin tin, using about ¼ cup batter in each cup.
  • Bake for 16-18 minutes, or until the edges are lightly golden brown and a cake tester inserted into the center comes out clean. Remove from oven, then transfer muffins to a wire rack to cool. Serve warm.

Notes

  • Once cooled, store in an airtight container for up to 3 days at room temperature. Store in the fridge in an airtight container for up to 5 days.
  • Warm slightly to serve from the fridge (they firm up a bit when they’re cold so warming slightly returns them to their softer texture).
  • You can also freeze the muffins in a freezer bag with as much air removed as possible for up to 3 months. Thaw at room temperature or in 15-second increments in the microwave.
  • I like using whole-milk Greek yogurt in this recipe.
  • Gluten-free: Substitute cup-for-cup gluten-free flour in place of the wheat flour.

Nutrition

Serving: 1 muffin, Calories: 154kcal, Carbohydrates: 13g, Protein: 7g, Fat: 8g, Saturated Fat: 5g, Polyunsaturated Fat: 0.5g, Monounsaturated Fat: 2g, Trans Fat: 0.2g, Cholesterol: 49mg, Sodium: 259mg, Potassium: 69mg, Fiber: 0.4g, Sugar: 1g, Vitamin A: 264IU, Calcium: 121mg, Iron: 1mg
Tried this recipe?Rate in the comments and tag @yummytoddlerfood on IG!

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5 from 5 votes

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Comments

  1. 5 stars
    Just made them and came out so soft and fluffy and my toddler is enjoying them as I type this comment 🙂 Thanks so much for this easy and delicious recipe…Will for sure be making them again

  2. 5 stars
    I have made this now and added dried onion instead of garlic and dried parsley as I didn’t have fresh. My toddler loved it! I have to freeze them quickly otherwise they will disappear in minutes. He said “don’t eat it mummy because these are mine” 😅😂. Adding it to his lunchbox tomorrow.

  3. 5 stars
    These are AMAZING. So easy to pull together and give the vibes of red lobster biscuits but less greasy. New go to side!

    Also love how they have a decent amount of protein so great lunch option for the kiddos!

    1. You can use whole wheat pastry flour or whole wheat flour with an extra splash of milk. Due to the density of the yogurt and cheese, I do not recommend trying to make these with something like almond flour.

  4. 5 stars
    Fluffy, flavourful and great breakfast addition or snack on the go! I added all the extra suggestions, highly recommend. I also added some bacon bits on the top of a few of them!