These nutritious Banana Chocolate Chip Muffins have whole grains, less added sugar, and the BEST flavor. They’re a great breakfast or snack option…or just as a way to use up overripe bananas!

These banana muffins have been a family favorite for years. They are easy to make since the batter simply mixes together in a bowl and they get their sweetness primarily from ripe bananas.
There’s a bit of added sweetener in the mix to help even things out and just enough dark chocolate to make these feel like a treat.
The Healthy Banana Muffins have beneficial fats, potassium, protein, and even some fiber. But mostly…they just taste really good!
I love the hint of peanut butter in these and that they’re a really satisfying muffin for kids, either on their own or topped with more peanut butter, cream cheese, or butter.
Why This Recipe Works
With whole grains for nutrition and ripe bananas for sweetness, plus a hit of dark chocolate for extra yum, these muffins are a perfect combination of delicious and nutritious.
(You may also like my Sugar-Free Banana Muffins, Banana Yogurt Muffins, and my Mini Chocolate Chip Muffins.)
Table of Contents
Your toddler won’t eat? Help is here!
Sign up for our email updates to get tips and ideas sent your way!
Ingredients You Need
To make these Healthy Banana Chocolate Chip Muffins, you’ll need the following ingredients on hand.

- Flour: You can use whole wheat flour or buckwheat. Buckwheat flour is a great gluten-free alternative that’s incredibly nutritious.
- Cinnamon: This adds a pleasant flavor to the muffin batter.
- Ground flaxseed: This is optional, but is an easy way to add in more healthy fats and fiber.
- Ripe bananas: These are key to the classic banana flavor, so do be sure to use very ripe bananas with a lot of brown spots.
- Baking powder and baking soda: These work together to help the muffins rise and cook through.
- Vanilla extract: A little vanilla enhances the flavor of the banana muffins.
- Milk: I bake with whole milk, but you can really use any type. Nondairy milk works too.
- Peanut butter: You can use creamy unsweetened peanut butter here, or trade in regular melted butter for a nut-free version.
- Eggs: I bake with large eggs and in this recipe, they help create structure and moistness.
- Chocolate chips: We usually top our muffins with a few chocolate chips, though you can also stir them right into the batter.
Featured Review⭐️⭐️⭐️⭐️⭐️
“These deserve 6 stars! They are the best banana muffins and a healthier choice too. They are very moist.” —Michelle
Step-by-Step Directions
Here’s a preview of how to make these Healthy Banana Chocolate Chip Muffins so you know what to expect from the process. Scroll down to the end of this post for the full information, including the amounts and the timing.

Step 1. Peel the banana and mash until very smooth.

Step 2. Add the dry ingredients to a medium bowl and stir to evenly distribute.

Step 3. Add the wet ingredients to the bowl. Stir together gently. Stir in the chocolate chips.

Step 4. Add to a muffin tin, dividing the batter among greased cups, and bake.
TIP: This recipe is for standard size muffins, but you can make them as mini muffins if you reduce the baking time.
Frequently Asked Questions
You’ll want to make sure that your bananas are very ripe with brown spots to ensure the best banana flavor and natural sweetness—which also enables us to use less added sugar in these. So they should look very brown!
Simply let them cool and store in a zip top freezer bag with as much air removed as possible for up to 3 months. Warm from frozen in the microwave in 15 second increments or thaw at room temp or in the fridge.
I know that it can be hard to bake gluten-free baked goods that the entire family will want to eat, but these definitely fit the bill. They’re moist and sweet, and are so good when served alongside coffee or milk. Buckwheat flour, which is naturally gluten-free and also very nutritious with ample fiber and protein, works really well here. It has a mild flavor too and is widely available in the flour or natural foods section of most grocery stores.
How to Store
Store the cooled Healthy Banana Chocolate Chip Muffins in an airtight container in the fridge for up to 5 days. You can freeze fully cooled muffins store in a zip top freezer bag with as much air removed as possible for up to 3 months. Warm from frozen in the microwave in 15 second increments or thaw at room temp or in the fridge.
Best Tips for Success
- Use very ripe bananas with brown spots for the best flavor.
- To make these gluten-free, use buckwheat flour.
- To make these dairy-free, use nondairy milk.
- You can leave out the chocolate chips if desired.
- If you have more bananas to use, try my Banana Smoothie with Milk, Banana Oatmeal Breakfast Cookies, and Banana Cupcakes.
Related Recipes
I’d love to know your feedback on this recipe if you try it, so please comment below to share!

Healthy Banana Chocolate Chip Muffins
Ingredients
- 1 cup very ripe mashed banana (about 2 medium)
- 2 large eggs
- ¾ cup milk (dairy or plain unsweetened nondairy milk)
- 3 tablespoons peanut butter (or regular butter, melted and cooled)
- 1 teaspoon pure vanilla extract
- 1 cup whole wheat flour (or buckwheat flour)
- ¼ cup sugar
- 2 tablespoons ground flaxseed (optional)
- 1 teaspoon cinnamon
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ¼ teaspoon salt
- ¼ cup dark chocolate chips (roughly chopped or use mini chips)
Instructions
- Preheat the oven to 400 degrees F and grease a standard muffin tin. Set aside.
- Mash the banana very smooth with a potato masher or fork.
- Add the flour, sugar, flaxseed (if using), cinnamon, baking powder, baking soda, and salt to a medium bowl. Stir together.
- Add the banana, eggs, milk, peanut butter, and vanilla and stir well.
- Add the chocolate chips.
- Spoon batter into prepared muffin tin, using about ¼ cup batter for each. Top with additional chocolate chips if desired.
- Bake for 16-20 minutes or until a cake tester inserted into the center comes out cleanly and the edges are golden brown.
- Let cool for about 5 minutes in the pan, then run a paring knife around the edges to help remove the muffins. Cool on a wire rack.
Equipment
Video
Notes
- Use very ripe bananas with brown spots for the best flavor.
- Gluten-free: Use buckwheat flour.
- Dairy-free: Use nondairy milk.
- Find my Vegan Banana Muffins or my Sugar-Free Banana Muffins here egg-free banana muffins.
- Store in an airtight container in the fridge for up to 5 days.
- You can freeze fully cooled muffins store in a zip top freezer bag with as much air removed as possible for up to 3 months. Warm from frozen in the microwave in 15 second increments or thaw at room temp or in the fridge.
- Serve cold or slightly warmed.
- Dice for younger kids if desired.
- You can leave out the chocolate chips if desired.
Nutrition
This post was first published February 2018.


























My 2.5 year old and I loved making these together! Such a wonderful breakfast and snack option.
These are SO good! My kids loved them!
These taste great, but mine fell a bit flat after removing them from the oven. They seem full cooked though… Any tips?
these muffins are perfect 🙂
My toddler loved these! I was ready to pack them up for daycare then remembered the peanut butter. Can these be made without or with sunbutter?
You can use regular butter or Sunbutter next time!
Hi! I plan on making this, but does it matter if you use whole milk or 2% milk?
They should both work the same!
What a great recipe!!! These muffins came out perfect. I made them for my toddler but did a little taste testing last night and actually threw some in my lunch for a snack at work. 5 STARS!
Do you think you can substitute the sugar with maple syrup and/or coconut sugar? Would it not be sweet enough without the sugar all together? Thanks!
Coconut sugar would work the same so if you’re choosing between the two, that’s the one I know will work without any other adjustments! (they will not be sweet enough without any sweetener, or I should say that they could be fine if your bananas are super, super ripe, but the small amount of added sweetener ensures they are great)
I made these today with my two year old and we both loved them. We used white whole wheat flour and they were perfect.
Made it with whole wheat flour and used a flax/chia blend. Came out perfect!
the moms in these comments are so cute 🙂 <3 can i substitute all purpose flour for buckwheat? if so, same measurements?
Hey, great recipe! My son and I love it. I’m using the buckwheat flour version and my muffins don’t seem to rise. Is it because of the buckwheat or am I doing something big wrong?
Liberty
Maybe check that your baking powder is fresh? That would be the simplest explanation.
Skipped the flaxseed and made dairy free… beautiful sweet but very nutritious muffin for my princess of food fuss Ms 16 mths and our 11 yr boy. Thank you Amy – we would be lost without the dairy free options you provide!
I am so glad!
Hi Amy! Will this work with coconut milk ? Or is lactose free milk better ? I try to avoid dairy milk due to allergies but if I have to use it, I use lactose free. Also , if we skip the flax seed will it make a difference ?
Wonderful recipe ! Thanx for sharing !
I think coconut milk should be fine. Use additional oats to replace the flaxseed and it should be good!
I’m very excited to try this recipe for my 15-month old. Can I add diced strawberries to the muffins?
Yes I would think that would work fine!