This Yogurt Muffin recipe is as versatile as it is delicious! With a base recipe that bakes fluffy and just-sweet-enough muffins—and 6 options to add flavors from fruit, veggies, spices, and chocolate chips—it’s our favorite muffin for kids.

yogurt muffins in mixed flavors on countertop

Yogurt Muffins

I love healthy muffins for kids as easy snacks and breakfasts, and I am so happy to now have a basic muffin recipe that’s as good plain as it is with added flavorings. These are super fluffy, incredibly moist, and easy to vary. My kids love when I make a batch that has a few different flavors—so they each get to have their favorite flavor!

This yogurt muffin recipe works so well because the addition of yogurt makes them moist and tender. It also adds a nice dose of protein, calcium, and probiotics.

And then with the optional additions of blueberries, strawberries, cherries, chocolate chips, or carrots and raisins, you can chose your own flavor adventure each time you make a batch!

These yogurt muffins work well as an easy Toddler Breakfast, they can be packed into a Cold Lunch for Kids, and they are a great Toddler Snack idea.

(You may also like my Spinach Banana Muffins and my Donut Muffins.

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Ingredients You Need

Here is a look at the ingredients you need to make this yogurt muffin recipe to share with the kids so you know what to have on hand and ready to go.

ingredients in yogurt muffins
  • Flour: I like to use a mix of all-purpose and whole wheat flour in this recipe for Yogurt Muffins for a mix of both nutrition and lightness.
  • Baking powder and soda: Using a combination of these rising agents ensures the muffins rise and bake through as intended. Be sure your baking soda is fresh.
  • Whole-milk plain Greek yogurt: This type of yogurt is thick and creamy, and adds both protein and tenderness to the muffins. You can use reduced-fat yogurt if that’s what you have on hand, but whole milk yogurt is preferred.
  • Maple syrup: I sweeten this recipe with maple syrup, though you can also use honey for kids over age 1 if you prefer.
  • Unsalted butter: I like to bake with unsalted butter so I can control the salt in the recipe. You’ll want to melt it and let it cool slightly before adding it to the rest of the batter.
  • Eggs: I bake with large eggs, so plan to use them here so the volume of wet ingredients is correct.
  • Vanilla extract: You can use pure or artificial vanilla extract in this recipe.
  • Add-ins: You can add berries, other diced fruit, and/or chocolate chips to make this any flavor you like.

Step-by-Step Instructions

Here’s a look at the process involved in this yogurt muffin recipe so you know what to expect. Scroll down to the bottom of the post for the full information, including the amounts and timing.

how to make yogurt muffins in grid of four images.
  1. Stir together the wet ingredients in a medium bowl or large bowl.
  2. Stir in the dry ingredients, whisking gently to create a thick but uniform batter. (Expect the batter for your yogurt muffins to be thick!)
  3. Divide the batter among a greased muffin pan and distribute the add-ins—either using one for the whole batch or dividing up the batch.
  4. Bake until lightly golden brown around the edges.

TIP: I like to make a batch with a few different flavors in my Yogurt Muffins, so I divide up the batter as shown here. You can do a batch all in one flavor or you can stir 1 tablespoon of any add-in into each muffin cup.

yogurt muffins on wire rack

Frequently Asked Questions

What kind of yogurt do you use in yogurt muffins?

I prefer to use plain whole milk Greek style yogurt in this recipe for the most tender and moist results.

What age are these suitable for?

These are great for babies eating finger foods on up. Dice them up as needed for younger kids.

How does yogurt affect muffins?

Using yogurt in muffin batter is a great way to add moisture, tenderness, and richness without relying on butter or oil. It also adds protein, which makes the muffins more filling and satisfying.

What does yogurt replace in baking?

Yogurt often replaces butter or oil in baking, adding similar richness and moisture, but also adding protein and beneficial fats.

diced yogurt muffins on kids plates

How to Store

Once cooled, store these Yogurt Muffins in an airtight container for up to 3 days at room temperature. Store in the fridge in an airtight container for up to 5 days. Warm slightly to serve from the fridge. You can also freeze the muffins in a freezer bag with as much air removed as possible for up to 3 months. Thaw at room temperature or in 15-second increments in the microwave.

Find more tips on How to Freeze Muffins, too, which works for all muffins and is an easy method for these Greek Yogurt Muffins.

Best Tips for Success

  • Use one add-in per batch of these Greek yogurt muffins, or use 1 tablespoon of each per muffin to make a mixed batch.
  • I like using whole-milk Greek yogurt in this Yogurt Muffin recipe. (Regular yogurt will work, too.)
  • Dairy-free: Use a nondairy Greek-style yogurt like the plant-based options from Siggis.
  • Gluten-free: Use cup-for-cup gluten-free flour like the one from King Arthur flour.
  • Egg-free: Omit the eggs. Reduce the yogurt to ¾ cup and add ¼ cup milk. Proceed with the recipe for Yogurt Muffins below.
  • Dice up as needed for younger eaters.
  • Top with butter, nut butter, or jam as desired.
  • Try my Healthy Chocolate Chip Muffins, which are a version of this recipe. And my yummy Blueberry Yogurt Muffins, too.

I’d love to hear your feedback on this recipe so please comment below to share!

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yogurt-muffins-in-flavors-on-countertop

Favorite Yogurt Muffins

This is an epic of a basic muffin recipe that you can then add flavor to in all sorts of ways—from fruit to veggies to chocolate chips. The batter is packed with protein too, so the muffins are great for breakfast or snack. (The allergy-friendly substitutions are listed in the Notes section at the bottom.)
4.98 from 383 votes
Prep Time 10 minutes
Cook Time 16 minutes
Total Time 26 minutes
Cuisine American
Course Breakfast
Calories 134kcal
Servings 12

Ingredients

Optional Add-Ins (Choose One)

  • 1 cup chocolate chips
  • 1 cup shredded carrots, ½ cup raisins, 1 teaspoon cinnamon, ¼ teaspoon ground ginger
  • 2 cups finely diced strawberries (add 1 tablespoon fresh lemon zest if desired)
  • 2 cups blueberries (add 1 teaspoon cinnamon if desired)
  • 2 cups finely diced cherries
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Instructions

  • Preheat the oven to 375 degrees F. Grease a 12-cup standard muffin pan with nonstick spray.
  • In a medium bowl, stir together the flours, baking powder, baking soda, and salt.
  • In another bowl, stir together the yogurt, maple syrup, butter, eggs, and vanilla.
  • Gently stir the yogurt mixture into the flour mixture. (Expect the batter to be thick.)
  • Add your desired add-in. (You can also add 1 tablespoon of any add-in to each muffin cup, using ¼ cup batter, to make a batch with a few different flavors. Or you can bake them plain.) Stir gently to combine.
  • Divide batter among the prepared muffin tin, using about ¼ cup batter in each cup.
  • Bake for 16-18 minutes, or until the edges are lightly golden brown and a cake tester inserted into the center comes out clean. Remove from oven, then transfer muffins to a wire rack to cool fully.

Video

Notes

  • Once cooled, store in an airtight container for up to 3 days at room temperature. Store in the fridge in an airtight container for up to 5 days. Warm slightly to serve from the fridge (they firm up a bit when they’re cold so warming slightly returns them to their softer texture).
  • You can also freeze the muffins in a freezer bag with as much air removed as possible for up to 3 months. Thaw at room temperature or in 15-second increments in the microwave.
  • Use one add-in per batch of muffin, or use 1 tablespoon of each per muffin to make a mixed batch.
  • I like using whole-milk Greek yogurt in this recipe.
  • Dairy-free: Use a nondairy Greek-style yogurt like the plant-based options from Siggis and a neutral oil like canola in place of the butter.
  • Gluten-free: Substitute cup-for-cup gluten-free flour in place of the wheat flours.
  • Egg-free: Omit the eggs. Reduce the yogurt to ¾ cup. Add ¼ cup milk. Proceed with the recipe.
  • Dice up as needed for younger eaters.
  • Top with butter, nut butter, or jam as desired.

Nutrition

Serving: 1muffin, Calories: 134kcal, Carbohydrates: 18g, Protein: 4g, Fat: 5g, Saturated Fat: 3g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 1g, Trans Fat: 1g, Cholesterol: 38mg, Sodium: 147mg, Potassium: 92mg, Fiber: 1g, Sugar: 6g, Vitamin A: 159IU, Calcium: 57mg, Iron: 1mg
Tried this recipe?Rate in the comments and tag @yummytoddlerfood on IG!

This post was first published June 2021.

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4.98 from 383 votes (143 ratings without comment)

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Comments

  1. Hello! Would this work as a big cake instead of muffins? And how long would you bake it for in this case? Thank you!

  2. 5 stars
    This is now my go-to muffin recipe! I make them as mini muffins and they work with any mix-ins. I make them all the time. So delish!

  3. 5 stars
    My family’s favourite!! And I love that I can customise depending on what I have in the fridge and its delicious every time.

  4. 5 stars
    I’ve made these twice with Bob’s egg replacer due to an egg allergy, and they’ve turned out phenomenal both times. The first time was the carrot cake variation, the second was with shredded apple. These will be a regular snack for my toddler, thank you!

  5. 5 stars
    When I made it the first time, it was kinda dense so my daughter wasn’t a fan of it. Today I tried it again but did a little bit of tweaking to make banana muffins (ended up with 16 muffins). I added 2 more tbsp of butter, 2 tbsp whole milk, 2 ripe bananas (mashed) and 1 tsp of cinnamon. Also reduced the maple syrup to 1/6 cup. My daughter is now obsessed with the muffins! They are moist and fluffy with just a bit of sweetness.

    1. To make this with regular yogurt, I would use 1 cup regular plain yogurt and increase the all purpose flour to 1 cup. This should help ensure they don’t have too much moisture to bake through the same. Enjoy!

  6. 5 stars
    Love this recipe! I altered it a little bit as I didn’t want to add the maple syrup quantity in your recipe for my 18m old twins. So 20ml honey and it still turned out brilliant. What is a good non sugary substitute in your opinion?

  7. 5 stars
    We love this recipe. I was searching for something to get more protein in for my student athlete, and this hit the mark. They taste great, store well and they’re sturdy enough to be packed for school lunch or snack. Big win !

  8. 5 stars
    Made these for a snack to take to preschool – used chocolate chips and mini muffin tins – my 4 year old loved them!

    1. Yes, though I think I’d add 1/4 cup milk if you use 1.5 cups of whole wheat flour to ensure the batter isn’t too dry. You might get an extra muffin. Enjoy!

  9. 5 stars
    Hi ! I love these muffins but for some reason when I bake them, the bottom edges of the muffins become completely burnt / black while the inside of the muffins stay moist, but they still have to be thrown out because the outside of the muffin tastes burnt. I use your recommended temp for the minimum time and I use a baking spray from whole foods. What could be causing this?

    1. Hi- What kind of oil is the baking spray made of and what kind of pan are you using? It’s unusual they would get that brown in such a short amount of time at that temp, so I’d love to help you figure it out!

      1. Thank you so much for your reply! I use a baking spray called La Tourangelle all purpose baking spray. I don’t know what oil is in it. And I bought new pans because I thought the old pans could have been causing this issue – but no, it’s still happening – the pan I use is the OXO Good Grips non stick. I made a double batch of these today to get ready for back to school next week and all but 5 of them turned on black 🙁

      2. If it’s possible, I would try a different baking spray to see if it’s that. I am not super familiar with that one, I can’t imagine it would be the pans (and especially since it happened with the old pand and the new ones) I’m sorry this is happening though because it sounds super frustrating!